Wykaz publikacji Katedry Genetyki ( )

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1 Wykaz publikacji Katedry Genetyki ( ) 2016 Gruszka D., Janeczko A., Dziurka M., Pociecha E., Olestkova J., Szarejko I Barley brassinosteroid mutants provide an insight into phytohormonal homeostasis in plant reaction to drought stress. Frontiers in Plant Science 7: 1824 DOI: /fpls , ISSN X. Piasecka A., Sawikowska A., Kuczyńska A., Ogrodowicz P., Mikołajczak K., Krystkowiak K., Gudyś K., Guzy-Wróbelska J., Krajewski P., Kachlicki P Drought related secondary metabolites of barley (Hordeum vulgare L.) leaves, and their mqtls. The Plant Journal (accepted). DOI: /tpj.13430, ISSN Swida-Barteczka A., Kruszka K., Grabowska A., Pacak A., Jarmołowski A., Kurowska M., Szarejko I., Szweykowska-Kulińska Z Barley primary microrna expression pattern is affected by soil water availability. Acta Biochimica Polonica 63: 1-8 DOI: doi.org/ /abp.2016_1352, ISSN X Borowska-Żuchowska N., Kwaśniewski M., Hasterok R., Cytomolecular analysis of ribosomal DNA evolution in a natural allotetraploid Brachypodium hybridum and its putative ancestors dissecting complex repetitive structure of intergenic spacers. Frontiers in Plant Science, 7: DOI: /fpls , ISSN X Marzec M Strigolactones as part of the plant defence system. Trends in Plant Science 21 (11): DOI: /j.tplants , ISSN Bzdęga K., Janiak A., Książczyk T., Lewandowska A., Gancarek M., Sliwinska E., Tokarska- Guzik B A survey of genetic variation and genome evolution within the invasive Fallopia complex. PLOS One, 11 (8): e DOI: /journal.pone , ISSN Marzec M Perception and signaling of strigolactones. Frontiers in Plant Science 7: 1260 DOI: /fpls , ISSN X Ogrodowicz P., Adamski T., Mikołajczak K., Kuczyńska A., Surma M., Krajewski P., Sawikowska A., Górny A.G., Gudyś K., Szarejko I., Guzy-Wróbelska J., Krystkowiak K QTLs for earliness and yield-forming traits in the Lubuski CamB barley RIL population under various water regimes. Journal of Applied Genetics (2016) DOI: /s , ISSN Mikołajczak K., Ogrodowicz P, Gudyś K., Krystkowiak K., Sawikowska A., Frohmberg W., Górny A., Kędziora A., Jankowiak J., Józefczyk D., Karg G., Andrusiak J., Krajewski P., Szarejko I., Surma M., Adamski T., Guzy-Wróbelska J., Kuczyńska A Quantitative trait loci for yield and yield-related traits in spring barley populations derived from crosses between European and Syrian cultivars. PLOS One 11(5): e DOI: /journal.pone , ISSN

2 Mikołajczak K., Kuczyńska A., Krajewski P., Sawikowska A., Surma M., Ogrodowicz P., Adamski T., Krystkowiak K., Górny A.G., Kempa M., Szarejko I., Guzy-Wróbelska J., Gudyś K Quantitative trait loci for plant height in Maresi CamB barley population and their associations with yield-related traits under different water regimes Journal of Applied Genetics (2016) DOI /s , ISSN Janiak A., Kwaśniewski M., Szarejko I Gene expression regulation in roots under drought. Journal of Experimental Botany 67 (4): DOI: /jxb/erv512, ISSN Kwaśniewski M., Daszkowska-Golec A., Janiak A., Chwiałkowska K., Nowakowska U., Sablok G., Szarejko I Transcriptome analysis reveals the role of the root hairs as environmental sensors to maintain plant functions under water-deficiency conditions. Journal of Experimental Botany 67 (4): DOI: /jxb/erv498, ISSN Chwiałkowska K., Nowakowska U., Mroziewicz A., Szarejko I., Kwaśniewski M Water-deficiency conditions differently modulate the methylome of roots and leaves in barley (Hordeum vulgare L.). Journal of Experimental Botany 67: DOI: /jxb/erv552, ISSN Marzec M., Gruszka D., Tylec P., Szarejko I Identification and functional analysis of the HvD14 gene involved in strigolactone signaling in Hordeum vulgare. Physiologia Plantarum 158: DOI: /ppl.12460, ISSN Słota M, Małuszynski M., Szarejko I An automated, cost-effective and scalable, flood-and-drain based root phenotyping system for cereals. Plant Methods 12: 1-15 DOI: /s , ISSN Gruszka D., Górniak M., Glodowska E., Wierus E., Oklestkova J., Janeczko A., Małuszynski M., Szarejko I A reverse-genetics mutational analysis of the barley HvDWARF gene results in identification of a series of alleles and mutants with short stature of various degree and disturbance in BR biosynthesis allowing a new insight into the process. Inernational Journal of Molecular Sciences 17: 1-18 DOI: /ijms , ISSN Janeczko A., Gruszka D., Pociecha E., Dziurka M., Filek M., Jurczyk B., Kalaji H.M., Kocurek M., Waligórski P Physiological and biochemical characterisation of watered and drought-stressed barley mutants in the HvDWARF gene encoding C6-oxidase involved in brassinosteroid biosynthesis. Plant Physiology and Biochemistry 99: DOI: /j.plaphy , ISSN Skubacz A., Daszkowska-Golec A., Szarejko I. (2016). The role and regulation of ABI5 (ABA-insensitive 5) in plant development, abiotic stress responses and phytohormone crosstalk. Frontiers in Plant Sciemce 7:1884. DOI: /fpls , ISSN: X Nowak K., Gaj M.D Stress-related function of bhlh109 in somatic embryo induction in Arabidopsis. Journal of Plant Physiology 193: DOI /j.jplph , ISSN

3 Wójcik A.M., Gaj M.D mir393 contributes to the embryogenic transition induced in vitro in Arabidopsis via the modification of the tissue sensitivity to auxin treatment. Planta 244: DOI: /s , ISSN Stanimirova I. Woźnica A., Plóciniczak T., Kwaśniewski M., Karczewski J A modified weighted mixture model for the interpretation of spatial and temporal changes in the microbial communities in drinking water reservoirs using compositional phospholipid fatty acid data. Talanta 160: DOI: doi.org/ /j.talanta , ISSN Wójcik A.M., Gaj M.D Genomika funkcjonalna mirna narzędzia badawcze functional genomics of mirna research tools. Postępy Biologii Komórki, 43: ISSN X Wójcikowska B., Gaj M.D Somatic embryogenesis in Arabidopsis. In: V.M. Loyola- Vargas and N. Ochoa-Alejo (Eds.), Somatic Embryogenesis: Fundamental Aspects and Applications. Springer International Publishing, Switzerland, pp DOI: / _11, ISBN Nowak K., Gaj M.D Transcription factors in the regulation of somatic embryogenesis. In: V.M. Loyola-Vargas and N. Ochoa-Alejo (Eds.), Somatic Embryogenesis: Fundamental Aspects and Applications. Springer International Publishing, Switzerland. pp DOI: / _5, ISBN Daszkowska-Golec A The role of abscisic acid in drought stress: How ABA helps plants to cope with drought stress. In: M.A. Hossain, S.H. Wani, S. Bhattachajee, D.J. Burritt, L.-S.P. Tran (Eds.) Drought Stress Tolerance in Plants, Vol 2, Springer International Publishing, pp DOI: / _5, ISBN Szarejko I., Szurman-Zubrzycka M., Nawrot M., Marzec M., Gruszka D., Kurowska M., Chmielewska B., Zbieszczyk J., Jelonek J., Małuszyński M Creation of a TILLING population in barley after chemical mutagenesis with sodium azide and MNU. In: J. Jankowicz-Cieślak, T.H. Tai, J. Kumlehn and B.J. Till (Eds). Biotechnologies for Plant Mutation Breeding. Protocols. Springer Open, Springer International Publishing, Switzerland, pp DOI: / _6, ISBN , ISBN Słota M., Małuszyński M., Szarejko I Root phenotyping pipeline for cereal plant. In: J. Jankowicz-Cieślak, T.H. Tai, J.Kumlehn, and B.J.Till (Eds). Biotechnologies for Plant Mutation Breeding. Protocols. Springer Open, Springer International Publishing, Switzerland, pp DOI: / _10, ISBN , ISBN Słota M., Małuszyński M., Szarejko I Bioinformatics-based assessment of the relevance of candidate genes for mutation discovery. In: J. Jankowicz-Cieślak, T.H. Tai, J.Kumlehn, and B.J.Till (Eds). Biotechnologies for Plant Mutation Breeding. Protocols. Springer Open, Springer International Publishing, Switzerland, pp

4 DOI; / _17, ISBN , ISBN Szurman-Zubrzycka M., Chmielewska B., Gajewska P., Szarejko I Mutation detection by analysis of DNA heteroduplexes in TILLING populations of diploid species. InJ. Jankowicz-Cieślak, T.H. Tai, J.Kumlehn, and B.J.Till (Eds). Biotechnologies for Plant Mutation Breeding. Protocols. Springer Open, Springer International Publishing, Switzerland, pp DOI; / _18, ISBN , ISBN Stolarek M., Gruszka D., Braszewska-Zalewska A., Maluszynski M Alleles of newly identified barley gene HvPARP3 exhibit changes inefficiency of DNA repair. DNA Repair 28: DOI: /j.dnarep , ISSN Stolarek M., Gruszka D., Braszewska-Zalewska A., Maluszynski M Functional analysis of the new barley gene HvKu80 indicates that it plays a key role in double-strand DNA break repair and telomere length regulation. Mutagenesis 30: DOI: /mutage/gev033, ISSN Nowak K., Wójcikowska B., Gaj M.D ERF022 impacts the induction of somatic embryogenesis in Arabidopsis through the ethylene-related pathway. Planta 241: DOI: /s , ISSN Marzec M., Muszyńska A., In silico analysis of the genes encoding proteins that are involved in the biosynthesis of the RMS/MAX/D pathway revealed new roles of strigolactones in plants. International Journal of Molecular Sciences 16, DOI: /ijms , ISSN Marzec M., Szarejko I., Melzer M Arabinogalactan proteins are involved in root hair development in barley. Journal of Experimental Botany 66: DOI: /jxb/eru475, ISSN Wójcikowska B., Gaj M.D LEAFY COTYLEDON2-mediated control of the endogenous hormone content: implications for the induction of somatic embryogenesis in Arabidopsis. Plant Cell Tissue and Organ Culture 121: DOI: /s , ISSN Marzec M., Melzer M., Szarejko I Root hair development in the grasses: What we already know and what we still need to know. Plant Physiology 168: DOI: /pp , ISSN Płazek A., Dubert F., Kope P., Krepski T., Kacorzyk P., Micek P., Kurowska M., Szarejko I., Zurek G In vitro-propagated Miscanthus x giganteus plants can be a source of diversity in terms of their chemical composition. Biomass and Bioenergy 75: DOI: /j.biombioe , ISSN Gajek K., Janiak A., Epigenetyczne skutki poliploidyzacji u roślin. Postępy Biologii Komórki 42: ISSN X

5 2014 Dockter C., Gruszka D., Braumann I., Druka A., Druka I., Franckowiak J., Gough S.P., Janeczko A., Kurowska M., Lundqvist J., Lundqvist U., Marzec M., Matyszczak I., Müller A.H., Oklestkova J., Schulz B., Zakhrabekova S., Hansson M Induced variations in brassinosteroid genes define barley height and sturdiness, and expand the green revolution genetic toolkit. Plant Physiology 166: DOI: /pp , ISSN Chmielewska B., Janiak A., Karcz J., Guzy-Wróbelska J., Forster B.P., Nawrot M., Rusek A., Smyda P., Kędziorski P., Małuszyński M., Szarejko I Morphological, genetic and molecular characteristics of barley root hair mutants. Journal of Applied Genetics 55: DOI: /s x, ISSN Marzec M., Muszyńska A., Melzer M., Sas-Nowosielska H., Kurczyńska E.U Increased symplasmic permeability in barley root epidermal cells correlates with defects in root hair development. Plant Biology 16: DOI: /psb.27972, ISSN Janiak A., Galej K., Parusel J.B., Szarejko I A study of the genetic variation of the aquatic fern Marsilea quadrifolia L. preserved in botanical collections in Poland andoriginated from natural populations in Europe. Flora 209: DOI: /j.flora , ISSN Marzec M., Melzer M., Szarejko I The evolutionary context of root epidermis cell patterning in grasses (Poaceae). Plant Signaling & Behavior 9: e27972 DOI: /psb.27972, ISSN Marzec M., Kurczyńska E Importance of symplasmic communication in cell differentiation. Plant Signaling & Behavior 9: e27931 DOI: /psb.27931tt, ISSN Salvi S., Druka A., Milner S.G., Gruszka D Induced genetic variation, TILLING and NGS-based cloning. In: Kumlehn J. and Stein N. (Eds.) Biotechnological Approaches to Barley Improvement. Biotechnology in Agriculture and Forestry 69, Springer-Verlag Berlin Heidelberg, pp DOI: / , ISBN X Guzy-Wróbelska J., Gudyś K Construction of high quality 'function' maps for the identification of quantitative trait loci related to drought tolerance in barlev. Institute of Plant Genetics Polish Academy of Sciences. Dissertations and Monographs 19: Marzec M., Melzer M., Szarejko I Asymmetric growth of root epidermal cells is related to the differentiation of root hair cells in Hordeum vulgare (L.). Journal of Experimental Botany 64 (16): DOI: /jxb/ert300, , ISSN Daszkowska-Golec A., Szarejko I Open or close the gate stomata action under the control of phytohormones in drought stress conditions. Frontiers in Plant Science 4:138 DOI: /fpls , ISNN

6 Daszkowska-Golec A., Chorżzy E., Małuszynski M., Szarejko I Towards the identification of new genes involved in ABA-dependent abiotic stresses using Arabidopsis suppressor mutants of abh1 hypersensitivity to ABA during seed germination. International Journal of Molecular Sciences 14: DOI: /ijms , ISSN Daszkowska-Golec A., Wojnar W., Rosikiewicz M., Szarejko I., Małuszynski M., Z. Szweykowska-Kulińska and A. Jarmolowski Arabidopsis suppressor mutant of abh1 shows a new face of the already known players ABH1 (CBP80) and ABI4 in response to ABA and abiotic stresses during seed germination. Plant Molecular Biology 81: DOI: /s , ISSN Gliwicka M., Nowak K., Balazadeh S., Mueller-Roeber B., Gaj M.D Extensive modulation of the transcription factor transcriptome during somatic embryogenesis in Arabidopsis thaliana. PLOS One 8: e69261 DOI: /journal.pone , ISSN Wojcikowska B., Jaskóła K., Gąsiorek P., Meus M., Nowak K., Gaj M.D LEAFY COTYLEDON2 (LEC2) promotes embryogenic induction in somatic tissues of Arabidopsis, via YUCCA-mediated auxin biosynthesis. Planta 238: DOI: /s , ISSN Marzec M., Muszyńska A., Gruszka D The role of strigolactones in nutrient-stress responses in plants. International Journal of Molecular Sciences 14: DOI: /ijms , ISSN Gruszka D The brassinosteroid signaling pathway New key players and interconnections with other signaling networks crucial for plant development and stress tolerance. International Journal of Molecular Sciences 14: DOI: /ijms , ISSN Guzy-Wróbelska J., Filek M., Kaliciak A., Szarejko I., Machackova I., Krekule J.Barciszewska M Vernalization and photoperiod-related changes in the DNA methylation state in winter and spring rapeseed. Acta Physiologia Plantarum 35: DOI: /s , ISSN Houston K., McKim S.M., Comadrana J., Bonar N., Druka, Uzrek N., Cirillo E., Guzy- Wrobelska J., Collin N.C., Halpin C., Hansson M., Dockter C., Druka A., Waugha R Variation in the interaction between alleles of HvAPETALA2 and microrna172 determines the density of grains on the barley inflorescence. PNAS 110 (41): DOI: /pnas , ISSN Lundqvist J., Braumann I., Kurowska M., Müller A.H., Hansson M Catalytic turnover triggers exchange of subunits of the magnesium chelatase AAA motor unit. Journal of Biological Chemistry 288: DOI: /jbc.M , ISSN X Szczecińska M., Kwaśniewski M., Chwiałkowska K., Sawicki J Isolation and characterization of microsatellite loci in Pulsatilla patens (L.) Mill. (Ranunculaceae) a rare and endangered plant species in Europe. Conservation Genetics Resources 5: DOI: /s z, ISSN

7 Woźnica A., Nowak A., Ziemski P., Kwaśniewski M., Bernaś T Stimulatory effect of xenobiotics on oxidative electron transport of chemolithotrophic nitrifying bacteria used as biosensing element. PLOS One 8: e53484 DOI: /journal.pone , ISSN Koprowski R., Wróbel Z., Korzyńska A., Chwiałkowska K., Kwaśniewski M Automatic analysis of 2D polyacrylamide gels in the diagnosis of DNA polymorphisms. BioMedical Engineering Online 11/1/71 DOI: / X-12-68, ISSN X Kwaśniewska J., Kwaśniewski M Comet-FISH for the evaluation of plant DNA damage after mutagenic treatments. Journal of Applied Genetics 54: DOI: /s , ISSN Kwaśniewski M., Chwiałkowska K., Kwaśniewska J., Kusak J., Siwinski K., Szarejko I Accumulation of peroxidase-related reactive oxygen species in trichoblasts correlates with root hair initiation in barley. Journal of Plant Physiology 170: DOI: /j.jplph , ISSN Kwaśniewski M., Nowakowska U., Szumera J., Chwiałkowska K., Szarejko I iroothair: A comprehensive root hair genomics database. Plant Physiology 161: DOI: /pp , ISSN Guzy-Wróbelska J., Grzybkowska D Dwadzieścia lat mapowania genów i QTL na mapach genetycznych jęczmienia. Postępy Biologii Komórki 40 (3): ISSN X Lip S., Kurowska M., Szarejko I., Rodzina czynników transkrypcyjnych NAC a zwiększenie tolerancji na stres niedoboru wody u roślin tolerancji na stres niedoboru wody u roślin. Postępy Biochemii 59: ISSN Daszkowska-Golec A., Szarejko I The Molecular basis of ABA-mediated plant response to drought. In: Kourosh Vahdati (ed.) Abiotic stress - Plant responses and applications in agriculture., InTech, Rijeka, pp: DOI: /53128, ISBN: