RNA: from transcription to degradation

Transkrypt

1 Vol. 63 No 4/2016 QUARTERLY PL ISSN X on-line at: Contents RNA: from transcription to degradation Editors of the Issue: Marek Figlerowicz and Zofia Szweykowska-Kulińska Editorial Marek Figlerowicz and Zofia Szweykowska-Kulińska...I Review When small RNAs become smaller: emerging functions of snornas and their derivatives Anna M. Mleczko and Kamilla Bąkowska-Żywicka Overview of the RNA G-quadruplex structures Magdalena Malgowska, Karolina Czajczynska, Dorota Gudanis, Aleksander Tworak and Zofia Gdaniec Structure and function of RNA elements present in enteroviral genomes Mariola Dutkiewicz, Aleksandra Stachowiak, Agata Swiatkowska and Jerzy Ciesiołka Deciphering the soybean molecular stress response via high-throughput approaches Agata Tyczewska, Joanna Gracz, Jakub Kuczyński and Tomasz Twardowski The role of the 5 terminal region of p53 mrna in the p53 gene expression Agata Swiatkowska, Paulina Zydowicz, Joanna Sroka and Jerzy Ciesiołka Participation of non-coding RNAs in plant organelle biogenesis Michal Rurek Biological functions of natural antisense transcripts Wojciech Rosikiewicz and Izabela Makałowska A regulatory function of long non-coding RNAs in red blood cell development Klaudia Kulczyńska and Mirosława Siatecka

2 Regulatory RNAs in Planarians Kamila Pawlicka, Patrick M. Perrigue and Jan Barciszewski MicroRNA-mediated regulation of flower development in grasses Aleksandra Smoczynska and Zofia Szweykowska-Kulinska Journey from the Center of the Cell the intra- and intercellular transport of mrna Anna Kasprowicz-Maluśki, Wojciech Kwiatkowski, Alicja Starosta and Przemysław Wojtaszek Contributions of the Hfq protein to translation regulation by small noncoding RNAs binding to the mrna coding sequence Zuzanna Wroblewska and Mikolaj Olejniczak Selected small molecules as inducers of pluripotency Małgorzata Baranek, Wojciech T. Markiewicz and Jan Barciszewski MicroRNA biogenesis: Epigenetic modifications as another layer of complexity in the microrna expression regulation Susheel Sagar Bhat, Artur Jarmolowski and Zofia Szweykowska-Kulińska Circulating micrornas in Cardiovascular Diseases Marta Orlicka-Płocka, Dorota Gurda, Agnieszka Fedoruk-Wyszomirska, Iwona Smolarek and Eliza Wyszko The current state of bioeconomy in Poland Ewa Woźniak and Tomasz Twardowski Regular papers New functionality of RNAComposer: an application to shape the axis of mir160 precursor structure Maciej Antczak, Mariusz Popenda, Tomasz Zok, Joanna Sarzynska, Tomasz Ratajczak, Katarzyna Tomczyk, Ryszard W. Adamiak and Marta Szachniuk Computational prediction of non-enzymatic RNA degradation patterns Agnieszka Rybarczyk, Paulina Jackowiak, Marek Figlerowicz and Jacek Blazewicz StructAnalyzer a tool for sequence versus structure similarity analysis Jakub Wiedemann and Maciej Miłostan

3 Silencing of genes responsible for polyq diseases using chemically modified single-stranded sirnas Agnieszka Fiszer, Marianna E. Ellison-Klimontowicz and Wlodzimierz J. Krzyzosiak Searching for anti-glioma activity. Ribonucleoside analogues with modifications in nucleobase and sugar moieties Grzegorz Framski, Dariusz Wawrzyniak, Zofia Jahnz-Wechmann, Agnieszka Szymanska-Michalak, Adam Kraszewski, Jan Barciszewski, Jerzy Boryski and Jacek Stawinski How short RNAs impact the human ribonuclease Dicer activity: putative regulatory feedback-loops and other RNA-mediated mechanisms controlling microrna processing Natalia Koralewska, Weronika Hoffmann, Maria Pokornowska, Marek Milewski, Andrea Lipinska, Krystyna Bienkowska-Szewczyk, Marek Figlerowicz and Anna Kurzynska-Kokorniak RNA dactyloscopy Marta Magdalena Gabryelska, Eliza Wyszko and Jan Barciszewski RNA-Seq-based analysis of differential gene expression associated with hepatitis C virus infection in a cell culture Anna Hojka-Osinska, Lucyna Budzko, Agnieszka Zmienko, Agnieszka Rybarczyk, Patrick Maillard, Agata Budkowska, Marek Figlerowicz and Paulina Jackowiak Developmental changes in barley microrna expression profiles coupled with mirna target analysis Andrzej Pacak, Katarzyna Kruszka, Aleksandra Swida-Barteczka, Przemyslaw Nuc, Wojciech Karlowski, Artur Jarmolowski and Zofia Szweykowska-Kulinska Arabidopsis thaliana microrna162 level is posttranscriptionally regulated via splicing and polyadenylation site selection Maria Barciszewska-Pacak, Katarzyna Knop, Artur Jarmołowski and Zofia Szweykowska-Kulińska Barley primary microrna expression pattern is affected by soil water availability Aleksandra Swida-Barteczka, Katarzyna Kruszka, Aleksandra Grabowska, Andrzej Pacak, Artur Jarmolowski, Marzena Kurowska, Iwona Szarejko and Zofia Szweykowska-Kulinska Retroposition as a source of antisense long non-coding RNAs with possible regulatory functions Oleksii Bryzghalov, Michał Wojciech Szcześniak and Izabela Makałowska The structure of fadl mrna and its interactions with RybB srna Agata Groszewska, Zuzanna Wroblewska and Mikolaj Olejniczak

4 Assessing the 5S ribosomal RNA heterogeneity in Arabidopsis thaliana using short RNA next generation sequencing data Maciej Szymanski and Wojciech M. Karlowski

5 Index of Authors A Adamiak R.W. 737 Antczak M. 737 B Bąkowska-Żywicka K. 601 Baranek M. 709 Barciszewska-Pacak M. 811 Barciszewski J. 681; 709; 765; 785 Bhat S.S. 717 Bienkowska-Szewczyk K. 773 Blazewicz J. 745 Boryski J. 765 Bryzghalov O. 825 Budkowska A. 789 Budzko L. 789 C Ciesiołka J. 623; 645 Czajczynska K. 609 D Dutkiewicz M. 623 E Ellison-Klimontowicz M.E. 759 F Fedoruk-Wyszomirska A. 725 Figlerowicz M. 745; 773; 789 Fiszer A. 759 Framski G. 765 G Gabryelska M.M. 785 Gdaniec Z. 609 Grabowska A. 817 Gracz J. 631 Groszewska A. 835 Gudanis D. 609 Gurda D. 725 H Hoffmann W. 773 Hojka-Osinska A. 789 J Jackowiak P. 745; 789 Jahnz-Wechmann Z. 765 Jarmołowski A. 717; 799; 811; 817 K Karkowska-Kuleta J. 427 Karlowski W. 799 Karlowski W.M. 841 Kasprowicz-Maluśki A. 693 Knop K. 811 Koralewska N. 773 Kraszewski A. 765 Kruszka K. 799; 817 Krzyzosiak W.J. 759 Kuczyński J. 631 Kulczyńska K. 675 Kurowska M. 817 Kurzynska-Kokorniak A. 773 Kwiatkowski W. 693 L Lipinska A. 773 M Maillard P. 789 Makałowska I. 665; 825 Malgowska M. 609 Markiewicz WT. 709 Milewski M. 773 Miłostan M. 753 Mleczko A.M. 601 N Nuc P. 799 O Olejniczak M. 701; 835 Orlicka-Płocka M. 725 P Pacak A. 799; 817 Pawlicka K. 681 Perrigue PM. 681 Pokornowska M. 773 Popenda M. 737 R Ratajczak T. 737 Rosikiewicz W. 665 Rurek M. 653 Rybarczyk A. 745; 789 S Sarzynska J. 737 Siatecka M. 675 Smoczynska A. 687 Smolarek I. 725 Sroka J. 645 Stachowiak A. 623 Starosta A. 693 Stawinski J. 765 Swiatkowska A. 623; 645 Swida-Barteczka A. 799; 817 Szachniuk M. 737 Szarejko I. 817 Szcześniak M.W. 825 Szweykowska-Kulińska Z. 687; 717; 799; 811; 817 Szymanska-Michalak A. 765 Szymanski M. 841 T Tomczyk K. 737 Twardowski T. 631; 731 Tworak A. 609 Tyczewska A. 631 W Wawrzyniak D. 765 Wiedemann J. 753 Wojtaszek P. 693 Woźniak E. 731 Wroblewska Z. 701; 835 Wyszko E. 725; 785 Z Zmienko A. 789 Zok T. 737 Zydowicz P. 645

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