INFORMATION ABOUT RESEARCH ACTIVITY

Dr. Andrzej KASPERSKI Zielona Góra, 01.05.2017 Department of Biotechnology Faculty of Biological Sciences University of Zielona Góra ul. Szafrana 1, 65-516 Zielona Góra, Poland A.Kasperski@wnb.uz.zgora.pl orcid.org/0000-0003-2590-6688 http://akasperski.of.pl INFORMATION ABOUT RESEARCH ACTIVITY 1

RESEARCH ACTIVITY http://staff.uz.zgora.pl/akaspers/research_activity_ak_eng.pdf A. Articles published in journals A.1. After obtaining a doctoral degree A.1.1. Sun K., Liu S., Kasperski A., Tian Y., Dynamics analysis and biomass productivity optimisation of a microbial cultivation process through substrate regulation, Discrete Dynamics in Nature and Society, 2016, Vol. 2016, s. 1 13 (JCR, Impact Factor = 0.646, MNiSW = 20 points) A.1.2. *Kasperski A., Kasperska R., A new approach to the automatic identification of organism evolution using neural networks, BioSystems, 2016, Vol. 142 143, pp. 32 42 (JCR, Impact Factor = 1.495, MNiSW = 25 points, *corresponding author) A.1.3. Kasperski A., Sun K., Tian Y., New Approach to Control of the Dissolved Oxygen Concentration in a Biomass-Driven Self-Cycling Biochemical Process, Chemical Engineering Communications, 2016, Vol. 203, no 1, pp. 75 93 (JCR, Impact Factor = 1.433, MNiSW = 20 points) A.1.4. *Kasperski A., Kasperska R., Zastosowanie n-wymiarowej macierzy kropkowej do analizy zmienności genetycznej roślin, Biuletyn Instytutu Hodowli i Aklimatyzacji Roślin, 2015, no 276, pp. 69 83 (MNiSW = 6 points, *corresponding author) A.1.5. Tian Y., Sun H., Kasperski A., Analysis of a chemostat in the presence of viral infection expressed by a general infection rate, Communications in Mathematical Biology and Neuroscience, 2015, pp. 1 20 (JCR since 2017, MNiSW = 4 points) A.1.6. Sun K., Kasperski A., Tian Y., Studies on generalized kinetic model and Pareto optimization of a product-driven self-cycling bioprocess, Bioprocess and Biosystems Engineering, 2014, Vol. 37, pp. 1971 1987 (JCR, Impact Factor = 1.997, MNiSW = 25 points) A.1.7. *Kasperski A., Kasperska R., Identification of protein family representatives, Current Bioinformatics, 2014, Vol. 9, no 4, pp. 414 425 (JCR, IF, Impact Factor = 0.921, MNiSW = 20 points, *corresponding author) A.1.8. *Kasperski A., Kasperska R., Selected disease fundamentals based on the unified cell bioenergetics, Journal of Investigational Biochemistry, 2013, Vol. 2, no 2, pp. 93 100 (MNiSW = 4 points, *corresponding author) 2

A.1.9. Sun K., Kasperski A., Tian Y., Theoretical Study and Optimization of the Biochemical Reaction Process by Means of Feedback Control Strategy, Journal of Chemistry, 2013, Vol. 2013, Article ID 105765, 13 pages (JCR, Impact Factor = 0.622, MNiSW = 15 points) A.1.10. *Kasperski A., Kasperska R., A novel method of sequence similarity evaluation in n- dimensional sequence space, Current Bioinformatics, 2012, Vol. 7, no 3, pp. 295 303 (JCR, Impact Factor = 2.017, MNiSW = 15 points, *corresponding author) A.1.11. Sun K., *Kasperski A., Tian Y., Chen L., Modelling of the Corynebacterium glutamicum biosynthesis under aerobic fermentation conditions, Chemical Engineering Science, 2011, Vol. 66, no 18, pp. 4101 4110 (JCR, Impact Factor = 2.431, MNiSW = 35 points, *corresponding author) A.1.12. Sun K., *Kasperski A., Tian Y., Chen L., Modelling and optimization of a continuous stirred tank reactor with feedback control and pulse feeding, Chemical Engineering and Processing: Process Intensification, 2011, Vol. 50, no 7, pp. 675 686 (JCR, Impact Factor = 1.924, MNiSW = 30 points, *corresponding author) A.1.13. Tian Y., *Kasperski A., Sun K., Chen L., Theoretical approach to modelling and analysis of the bioprocess with product inhibition and impulse effect, BioSystems, 2011, Vol. 104, no 2-3, pp. 77 86 (JCR, Impact Factor = 1.784, MNiSW = 25 points, *corresponding author) A.1.14. Sun K., Tian Y., Chen L., *Kasperski A., Universal modelling and qualitative analysis of an impulsive bioprocess, Computers and Chemical Engineering, 2011, Vol. 35, no 3, pp. 492-501. (JCR, Impact Factor = 2.32, MNiSW = 35 points, *corresponding author) A.1.15. Sun K., *Kasperski A., Tian Y., Chen L., New approach to the nonlinear analysis of a chemostat with impulsive state feedback control, International Journal of Chemical Reactor Engineering, 2010, Vol. 8, pp. 40 (JCR, Impact Factor = 0.64, MNiSW = 20 points, *corresponding author) A.1.16. Tian Y., Chen L., Kasperski A., Modelling and simulation of a continuous process with feedback control and pulse feeding, Computers and Chemical Engineering, 2010, Vol. 34, pp. 976 984 (JCR, Impact Factor = 2.072, MNiSW = 32 points) A.1.17. Sun K., Tian Y., Kasperski A., Chen L., Nonlinear Modelling and Qualitative Analysis of a Real Chemostat with Pulse Feeding, Discrete Dynamics in Nature and Society, 2010, Vol. 2010, pp. 18 (JCR, Impact Factor = 0.967, MNiSW = 27 points) 3

A.1.18. Sun K., Tian Y., Chen L., Kasperski A., Nonlinear modelling of a synchronized chemostat with impulsive state feedback control, Mathematical and Computer Modelling, 2010, Vol. 52, no 1-2, pp. 227 240 (JCR, Impact Factor = 1.066, MNiSW = 27 points) A.1.19. Tian Y., Sun K., Chen L., Kasperski A., Studies on the dynamics of a continuous bioprocess with impulsive state feedback control, Chemical Engineering Journal, 2010, Vol. 157, no 2-3, pp. 558 567 (JCR, Impact Factor = 3.074, MNiSW = 32 points) A.1.20. *Kasperski A., Kasperska R., Rupiński D., Computer system for managing court expert documents, Management, 2009, Vol. 13, no 1, pp. 222 232 (MNiSW = 6 points, *corresponding author) A.1.21. Kasperska R., Kasperski A., Skaloptym - universal software for optimization of technical problems, Journal of Technology and Information Education, 2009, Vol. 1, no 3, pp. 139 144 A.1.22. *Kasperski A., Miśkiewicz T., Optimization of pulsed feeding in a Baker's yeast process with dissolved oxygen concentration as a control parameter, Biochemical Engineering Journal, 2008, Vol. 40, no 2, pp. 321 327 (JCR, Impact Factor = 1.889, MNiSW = 24 points, *corresponding author) A.1.23. *Kasperski A., Modelling of cells bioenergetics, Acta Biotheoretica, 2008, Vol. 56, no 3, pp. 233 247 (JCR, Impact Factor = 0.735, MNiSW = 15 points, *corresponding author) A.2. Before obtaining a doctoral degree A.2.1. *Kasperski A., Miśkiewicz T., An adaptive fuzzy logic controller using the respiratory quotient as an indicator of overdosage in the baker's yeast process, Biotechnology Letters, 2002, Vol. 24, no 1, pp. 17 21 (JCR, Impact Factor = 0.802, MNiSW = 15 points, *corresponding author) A.2.2. Miśkiewicz T., *Kasperski A., A fuzzy logic controller to control nutrient dosage in a fed-batch baker's yeast process, Biotechnology Letters, 2000, Vol. 22, pp. 1685 1691 (JCR, Impact Factor = 0.967, MNiSW = 15 points, *corresponding author) B. Chapters in monographs B.1. After obtaining a doctoral degree B.1.1. Kasperska R.J., Kasperski A., The introduction of life-saving rules in European companies, Scientic and practical aspects, ed. by Dudarski G., Martinka J., Rybakowski M., Wydawnictwo Naukowe Polskiego Towarzystwa Profesjologicznego, Institute of Safety Engineering and Work Sciences, University of Zielona Góra, Zielona Góra 2016, pp. 97 112, ISBN: 978-83-942313-6-1 4

(MNiSW = 5 points) B.1.2. Kasperska R., Kasperski A., Ekspert czy system ekspertowy? Problem wyboru źródła profesjonalnej wiedzy, Wybrane zagadnienia aktywności zawodowej człowieka na rynku pracy, red. nauk. Pietrulewicz B., Paszkowicz M.A., Wydawnictwo Naukowe Polskiego Towarzystwa Profesjologicznego, Uniwersytet Zielonogórski, Zielona Góra 2015, pp. 65 76, ISBN: 978-83-94313-2-3 B.1.3. Kasperska R., Kasperski A., Ochrona zdrowia pacjentów w domowej wentylacji mechanicznej, Ergonomia, ochrona zdrowia i bezpieczeństwo w pracy, red. nauk. Kasperska R.J., Lasota A.M., Dudarski G., Wydawnictwo Naukowe Polskiego Towarzystwa Profesjologicznego, Uniwersytet Zielonogórski, Zielona Góra 2015, pp. 47 60, ISBN: 978-83-942313-0-9 B.1.4. Kasperska R., Kasperski A., Odwzorowania natury w nauce i inżynierii, Wyzwania i dylematy edukacyjno-zawodowe, red. nauk. Baron-Polańczyk E., Klementowska A., Wydawnictwo Naukowe Polskiego Towarzystwa Profesjologicznego, Uniwersytet Zielonogórski, Zielona Góra 2015, pp. 107 122, ISBN: 978-83-932280-9-6 B.1.5. Kasperska R., Kasperski A., Feedback w ocenie rozwoju kompetencji pracowniczych, Praca i rozwój zawodowy w warunkach współczesnych przemian, red. nauk. Pietrulewicz B., Baron-Polańczyk E., Klementowska A., Wydawnictwo Naukowe Polskiego Towarzystwa Profesjologicznego, Uniwersytet Zielonogórski, Zielona Góra 2013, pp. 91 104, ISBN: 978-83-932280-3-4 B.1.6. Kasperska R., Kasperski A., Rupiński D., Komputerowa implementacja repozytorium dokumentów, Współczesne problemy techniki, zarządzania i edukacji, red. nauk. Pietrulewicz B., Uniwersytet Zielonogórski, Instytut Edukacji Techniczno- Informatycznej, Zielona Góra 2008, pp. 27 35, ISBN: 978-83-748129-9-0 B.1.7. Kasperska R., Kasperski A., Agent programowy w systemie optymalizacji konstrukcji cienkościennych, Współczesne problemy techniki, zarządzania i edukacji, red. nauk. Pietrulewicz B., Uniwersytet Zielonogórski, Instytut Edukacji Techniczno- Informatycznej, Zielona Góra 2008, pp. 37 47, ISBN: 978-83-748129-9-0 5

C. Patents C.1. After obtaining a doctoral degree http://staff.uz.zgora.pl/akaspers/research_activity_ak_eng.pdf C.1.1. Kasperski A., Miśkiewicz T., Sposób sterowania dopływem pożywki w hodowli drobnoustrojów, zwłaszcza drożdży piekarskich, No: 382294, Date of patent application: 26-04-2007, Date of grant of the patent: 08-11-2012 C.2. Before obtaining a doctoral degree C.2.1. Miśkiewicz T., Kasperski A., Sposób wytwarzania drobnoustrojów, zwłaszcza drożdży piekarskich, No: 193986, Date of patent application: 27-10-2000, Date of grant of the patent: 30-04-2007 D. Participation in conferences D.1. After obtaining a doctoral degree D.1.1. Kempka K., Kasperski A., Kamiński P., A new approach to the analysis of development of stem cell technology using artificial intelligence methods, 11th International Conference of Young Naturalists - From Biotechnology to Environmental Protection, Zielona Góra, 2016 (praca wyróżniona II miejsce w konkursie prezentowanych prac). D.1.2. Kempka K., Kasperski A., Kamiński P., Analysis of the dynamics of stem cell transplantation technology development, 10th International Conference of Young Naturalists - From Biotechnology to Environmental Protection, Zielona Góra, 2015. D.1.3. Kasperski A., Kasperska R., Optymalizacja dwukryterialna procesów bioreaktorowych, XLII Sesja Naukowa Komitetu Nauk o Żywności Polskiej Akademii Nauk "Żywność- Zdrowie-Przyszłość", Lublin, 2015. D.1.4. Kasperski A., Kasperska R., Dwupoziomowa analiza zmienności genetycznej organizmów, Nauka dla Hodowli i Nasiennictwa Roślin Uprawnych: XII Ogólnopolska Konferencja Naukowa, Zakopane, 2015. D.1.5. Kempka K., Kasperski A., Application of AI methods for the identification and analysis of metabolic pathways, 9th International Conference of Young Naturalists - From Biotechnology to Environmental Protection, Zielona Góra, 2014 (praca wyróżniona II miejsce w konkursie prezentowanych prac). D.1.6. Kasperska R., Kasperski A., A new method of protein representative selection, 44th International Biometrical Colloquium and IV Polish-Portuguese Workshop on Biometry, Cracow, Poland, 2014 D.1.7. Kasperski A., Kasperska R., Dynamic analysis and optimization of chemostat with pulse feeding, 44th International Biometrical Colloquium and IV Polish-Portuguese Workshop on Biometry, Cracow, Poland, 2014. D.1.8. Kasperski A, Kasperska R, Implementation of n-dimensional Dot-Matrix method, XLII International Biometrical Colloquium, Skierniewice, Poland, 2012. 6

D.1.9. Gajda M.J., Kaczor M., Bujnicki J.M., Bakulina A., Kasperski A., Friedman A.M., Bailey-Kellogg C., FILTREST3D: a simple method for discrimination of multiple structural models against spatial restraints, The 2nd Structural Bioinformatics & Computational Biophysics Meeting. Fortaleza, Brazylia, 2006. D.1.10. Gajda M.J., Kaczor M., Bakulina A., Kasperski A., Friedman A.M., Bailey-Kellogg C., Bujnicki J.M., FILTREST3D: a simple method for discrimination of multiple structural models against spatial restraints, 14th Annual International Conference on Intelligent Systems For Molecular Biology, Fortaleza, Brazylia, 2006. D.2. Before obtaining a doctoral degree D.2.1. Miśkiewicz T., Kasperski A., An intelligent method for baker's yeast process, Wykorzystanie drożdży w przetwórstwie żywności - tradycja i przyszłość: Konferencja naukowa z okazji 25-lecia Wydziału Nauk o Żywności: streszczenia referatów i komunikatów naukowych, Wrocław, 2002 pp. 28 29. D.2.2. Kasperski A., Miśkiewicz T., Nowa metoda optymalizacji produkcji drożdży piekarskich za pomocą regulatora rozmytego, Technologia żywności a oczekiwania konsumentów, XXXII Sesja naukowa KTiChŻ PAN, Warszawa, 2001. D.2.3. Miśkiewicz T., Kasperski A., Regulator optymalizujący dopływ pożywki w hodowli drożdży piekarskich, Żywność w dobie ekspansji naukowej: potencjał, oczekiwania, perspektywy: XXXI Sesja Naukowa Komitetu Technologii i Chemii Żywności PAN, Poznań, 2000, pp. 270. E. Reviews E.1. Reviews of 31 articles for 14 JCR journals after obtaining a doctoral degree E.1.1. Applied Microbiology and Biotechnology (1) E.1.2. Bioresource Technology (8) E.1.3. Chemical Engineering and Technology (1) E.1.4. Chemical Engineering Communications (1) E.1.5. Chemical Engineering Science (2) E.1.6. Current Bioinformatics (2) E.1.7. Food Chemistry (1) E.1.8. International Journal of Biomathematics (3) E.1.9. International Journal of System Science (2) E.1.10. Journal of Molecular Catalysis B: Enzymatic (1) E.1.11. Journal of Process Control (6) E.1.12. Mathematics and Computers in Simulations (1) 7

E.1.13. Powder Technology (1) E.1.14. Process Biochemistry (1) E.2. Reviews of 24 articles for international journals after obtaining a doctoral degree E.2.1. Communications in Mathematical Biology and Neuroscience (24) F. Grants F.1. After obtaining a doctoral degree F.1.1. Identification model and optimization with parameter uncertainty for the bioprocess driven by experimental data and priori knowledge, 2015, Grant NSFC (National Natural Science Foundation of China) period: January 2015 December 2018 (performer) F.1.2. The study of the effects of oil pollution in the local sea of Dalian Bay on the marine ecology, 2011, Grant NSFC (National Natural Science Foundation of China) no 11101066 period: January 2011 December 2014 (performer) F.1.3. Komputerowa analiza impulsowych bioprocesów, Andrzej Kasperski, Grant KBN 506-04-00-12, 2010 (manager) F.1.4. Komputerowe symulacje komórkowych procesów metabolicznych, Andrzej Kasperski, Grant KBN 506-04-00-16, 2004 (manager) G. Academic probation G.1. After obtaining a doctoral degree G.1.1. Dalian University of Technology (DUT), Dalian, China, period: 03.06.2015 25.06.2015. G.1.2. IHAR - PIB, Radzików, Poland, period: 26.01.2015 15.02.2015. H. Cooperation with scientific institutes H.1. After obtaining a doctoral degree H.1.1. Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Poland (2006). 8

H.1.2. Dalian University of Technology, School of Control Science and Engineering, China (since 2009). H.1.3. Dalian University, School of Information Engineering, China (since 2009). H.1.4. IHAR Radzików, Poland (2015). H.1.5. University of Rome, Department of Environmental Biology, Sapienza, Rome, Italy (since 2016). H.1.6. Istituto Superiore di Sanità (ISS), Rome, Italy (since 2016). H.1.7. University of Roma Tre, Department of Sciences, Rome, Italy (since 2016). I. Trainings I.1. After obtaining a doctoral degree I.1.1. Projektowanie i optymalizacja procesów hodowlanych w bioreaktorach, Labo Baza, Centrum Biotechnologii Poznańskiego Parku Naukowo-Technologicznego, Poznań, 2015. I.1.2. Opportunities and challenges presented by synthetic biology, Ministerstwo Nauki i Szkolnictwa Wyższego, Warszawa, 2014. I.1.3. Projektowanie leków w oparciu o strukturę receptora - teoria i praktyka, VitaInSilica Bioinformatics for Science, Poznań, 2012. I.1.4. Równość szans kobiet i mężczyzn w projekcie Zwiększenie liczby absolwentów kierunku matematyka na UZ, Zielona Góra, 2012. I.1.5. Kapitał wiedzy - wsparcie inicjatyw przedsiębiorczości akademickiej drogą do sukcesu w biznesie, Fundacja Przedsiębiorczości Akademickiej, Zielona Góra, 2012. I.1.6. Bioprocesy, bioinformatyka strukturalna i modelowanie struktury białek, VitaInSilica Bioinformatics for Science, Poznań, 2011. I.1.7. Podstawowe narzędzia bioinformatyczne, VitaInSilica Bioinformatics for Science, Poznań, 2011. I.2. Before obtaining a doctoral degree I.2.1. Pakiet Sztucznej Inteligencji Sphinx, AITech Artificial Intelligence Laboratory, 2000. I.2.2. Kurs dla kandydatów na głównych księgowych, Stowarzyszenie Księgowych Polskich, Zielona Góra, 1999. I.2.3. Kurs Rachunkowość przedsiębiorstw poziom II, Stowarzyszenie Księgowych Polskich, Zielona Góra, 1998. I.2.4. Zaawansowany Administrator Sieci Novell NetWare 4.10, System 3000, Kraków, 1997. I.2.5. Sensorprocesory TSS 400, Texas Instruments Bussiness Partner, Wrocław, 1993. 9

J. Journal editor J.1. After obtaining a doctoral degree http://staff.uz.zgora.pl/akaspers/research_activity_ak_eng.pdf J.1.1. Guest Editor of Communications in Mathematical Biology and Neuroscience, Special Issue on Dynamic Systems in Mathematical Biology, 2015 (http://scik.org/index.php/cmbn/announcement/view/47) K. Awards K.1. After obtaining a doctoral degree K.1.1. Computers & Chemical Engineering Most Cited Articles, 2010-2012 Articles, 2010-2012 (For the paper: Tian Y., Chen L., Kasperski A., Modelling and simulation of a continuous process with feedback control and pulse feeding, Computers and Chemical Engineering, 2010, Vol. 34, pp. 976 984), 2013. K.1.2. The Second Degree Team Award of Rector of the University of Zielona Góra for Scientific Achievements, 2012. K.1.3. The Second Degree Individual Award of Rector of the University of Zielona Góra for Scientific Achievements, 2009. K.1.4. Third place in MSc Thesis Competitions, Wrocław University of Technology, 2003. L. Hirsch index (H-index) L.1.1. Hirsch index equals to 9 in Web of Science https://sub3.webofknowledge.com L.1.2. Hirsch index equals to 9 in Scopus http://www.scopus.com/authid/detail.url?authorid=24480921500 10

M. Summary of the scientific achievements Table 1. Summary of the scientific achievements Scientific achievements Before obtaining a doctoral degree After obtaining a doctoral degree Total achievement Articles in JCR journals in English 2 18 20 Articles outside JCR journal list: - in English - in Polish 4 1 4 1 Chapters in monographs in a reviewed book with ISBN number: - in English - in Polish 1 6 1 6 National patents 1 1 2 Participation in conferences: - international - national 3 8 2 8 5 Total publication output 6 41 47 Total Impact Factor 1,769 28,033 29,802 Total MNiSW points 55 508 563 11